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Schulz Stefan Paul

** = Publications listed in SCI/SSCI/Pubmed

2013

Journal Articles

** Balkanyi, L; Schulz, S; Cornet, R; Bodenreider, O Medical concept representation: the years beyond 2000.
Stud Health Technol Inform. 2013; 192(12):1011-1011
PubMed FullText

 

** Boeker, M; Jansen, L; Grewe, N; Röhl, J; Schober, D; Seddig-Raufie, D; Schulz, S Effects of guideline-based training on the quality of formal ontologies: a randomized controlled trial.
PLoS One. 2013; 8(5): e61425-e61425. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Duque-Ramos, A; Fernandez-Breis, JT; Iniesta, M; Dumontier, M; Aranguren, ME; Schulz, S; Aussenac-Gilles, N; Stevens, R; Evaluation of the OQuaRE framework for ontology quality.
EXPERT SYST APPL. 2013; 40(7): 2696-2703.
Web of Science FullText FullText_MUG

 

** Martínez-Costa, C; Bosca, D; Legaz-García, MC; Tao, C; Fernández Breis, JT; Schulz, S; Chute, CG Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF.
Stud Health Technol Inform. 2013; 192(8): 1085-1085.
PubMed FullText

 

** Rodrigues, JM; Schulz, S; Rector, A; Spackman, K; Ustün, B; Chute, CG; Della Mea, V; Millar, J; Persson, KB Sharing Ontology between ICD 11 and SNOMED CT will enable Seamless Re-use and Semantic Interoperability.
Stud Health Technol Inform. 2013; 192(8): 343-346.
PubMed FullText

 

** Schulz, S; Balkanyi, L; Cornet, R; Bodenreider, O From Concept Representations to Ontologies: A Paradigm Shift in Health Informatics?
Healthc Inform Res. 2013; 19(4):235-242 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Bernhardt-Melischnig, J; Kreuzthaler, M; Daumke, P; Boeker, M Machine vs. Human Translation of SNOMED CT Terms.
Stud Health Technol Inform. 2013; 192: 581-584.
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** Schulz, S; Jansen, L Formal ontologies in biomedical knowledge representation.
Yearb Med Inform. 2013; 8(1): 132-146.
PubMed

 

Blondé W; Antezana E; Mironov V; Schulz S; Kuiper M; De Baets B Using the relation ontology Metarel for modelling Linked Data as multi-digraphs.
Semantic Web. 2013;
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Maegaard, B; Hahn, U; Brunak, S; Schulz, S; Andersen, UL; Welter, S Question answering for health professionals and laypersons.
Stud Health Technol Inform. 2013; 192(8): 1244-1244.

 

Rodrigues, JM; Akiyama, M; Souvignet, J; Fujita, K; Bousquet, C; Jin, Y; Lewalle, P; Van Looy, L; Taylor, AM; Schulz, S; Larizgoitia, I Is the International Information Model for Patient Safety (2IMPS) a Suitable Tool to Compare Patient Safety Reporting Systems?
Stud Health Technol Inform. 2013; 192(8): 1255-1255.

 

Rodrigues, JM; Schulz, S; Rector, A; Spackman, K; Ustün, B; Chute, CG; Della Mea, V; Millar, J; Brand Persson, K; Kalra, D Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability?
Stud Health Technol Inform. 2013; 192(8): 1234-1234.

 

Conference papers, proceedings, abstracts

Bernhardt-Melischnig, J; Schulz S Interpretation von Häufigkeitsadverbien in medizinischen Texten
Jahrestagung der Gesellschaft für Medizinische Ausbildung. 2013; -Jahrestagung der Gesellschaft für Medizinische Ausbildung; SEP 26-28, 2013; Graz, AUSTRIA. [Oral Communication]

 

Martínez Costa, C; Karlsson, D; Schulz, S SEMANTIC INTEROPERABILITY BY ONTOLOGY BASED REPRESENTATION OF CLINICAL INFORMATION
Proceedings of the eHealth2013. 2013; 65-71.-eHealth Austria ; MAI 23-24; Vienna, Austria. [Oral Communication]
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Martínez-Costa, C; Schulz, S Ontology-based reinterpretation of the SNOMED CT context model.
Proceedings of the 4th International Conference on Biomedical Ontology. CEUR Workshop Proceedings . 2013; 1040: 90-95.-International Conference on Biomedical Ontology ; JUL 8-9, 2013; Montreal, Kanada. [Oral Communication]
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Book chapters

Boeker, M; Grewe, N; Röhl, J; Schober, D; Schulz, S; Seddig-Raufie, D; Jansen, L Measuring the Effect of a Guideline-based Training on Ontology Design with a Competency Questions based Evaluation Approach.
In: Furbach, U; Staab, S; editors(s). Informatik 2013. IOS Press; 2013

 

Kreuzthaler, M; Schulz, S; Berghold, A Top-Down Informationsextraktion aus klinischen Texten für die Sekundärnutzung der elektronischen Patientenakte
In: Ammenwert, E; Hörbst, A; Hayn, D; Schreier, G editors(s). eHealth2013 Health Informatics meets eHealth - von der Wissenschaft zur Anwendung und zurück. Wien: OCG; p. 249-254. 2013(ISBN: 978-3-85403-392-9)

 

Martínez-Costa, C; Schulz, S Ontology-Based Reengineering of the SNOMED CT Context Model.
In: Peek, N; Marín Morales, R; Peleg, M editors(s). Artificial Intelligence in Medicine. 7885: Berlin Heidelberg: Springer; p. 216 - 220. 2013(ISBN: 978-3-642-38325-0)
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Martínez-Costa, C; Karlsson, D; Schulz, S SEMANTIC INTEROPERABILITY BY ONTOLOGY BASED REPRESENTATION OF CLINICAL INFORMATION
In: Ammenwerth, E; Hörbst, A; Hayn, D; Schreier, G; editors(s). Health Informatics meets eHealth - von der Wissenschaft zur Anwendung und zurück. Big Data - eHealth von der Datenanalyse bis zum Wissensmanagement. 293: 1080 Wien, Piaristengasse 19: Druckerei Riegelnik; p. 65-71. 2013(ISBN: 978-3-85403-29)
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Schulz, S; Boeker, M BioTopLite: An Upper Level Ontology for the Life Sciences. Evolution, Design and Application.
In: Furbach, U; Staab, S; editors(s). Informatik 2013. IOS Press; 2013

 

Schulz, S; Martínez-Costa, C How Ontologies Can Improve Semantic Interoperability in Health Care
In: Riaño, D; Lenz, R; Miksch, S; Peleg, M; Reichert, M; Teije, A editors(s). Lecture Notes in Computer Science. 8268: Berlin Heidelberg: Springer International Publishing; p. 1-10. 2013(ISBN: 978-3-319-03915-2)
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2012

Journal Articles

** Andrade, AQ; Blondé, W; Hastings, J; Schulz, S Process attributes in bio-ontologies.
BMC Bioinformatics. 2012; 13(5):217-217 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Andrade, AQ; Kreuzthaler, M; Hastings, J; Krestyaninova, M; Schulz, S Requirements for semantic biobanks.
Stud Health Technol Inform. 2012; 180(12):569-573
PubMed

 

** Balke, WT; Handels, H; Kalet, I; Kimura, M; Kulikowski, CA; Moura, LA; Pommert, A; Schulz, S Discussion of "spatial-symbolic query engine in anatomy".
Methods Inf Med. 2012; 51(6): 479-488.
Web of Science PubMed

 

** Hastings, J; Schulz, S Ontologies for human behavior analysis and their application to clinical data.
Int Rev Neurobiol. 2012; 103(1-2):89-107
Web of Science PubMed FullText FullText_MUG

 

** Kreuzthaler, M; Schulz, S Metonymies in medical terminologies. A SNOMED CT case study.
AMIA Annu Symp Proc. 2012; 2012(6):463-467 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

** Lopez-Garcia, P; Boeker, M; Illarramendi, A; Schulz, S; Usability-driven pruning of large ontologies: the case of SNOMED CT.
J Am Med Inform Assoc. 2012; 19(e1):e102-e109 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Rector, A; Rodrigues, JM; Spackman, K Competing interpretations of disorder codes in SNOMED CT and ICD.
AMIA Annu Symp Proc. 2012; 2012(3):819-827 [OPEN ACCESS]
PubMed PUBMED Central FullText

 

** Seddig-Raufie, D; Jansen, L; Schober, D; Boeker, M; Grewe, N; Schulz, S Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology.
J Biomed Semantics. 2012; 3 Suppl 2(5):S2-S2 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

Nohama, P; Pacheco, EJ; Andrade, RL; Bitencourt, JL; Markó, K; Schulz, S Quality issues in thesaurus building: a case study from the medical domain.
Brazilian Journal of Biomedical Engineering . 2012; 28(1): 11-22.
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Conference papers, proceedings, abstracts

Andrade, A; Almeida, M; Schulz S Revisiting ontological foundations of the OpenEHR Entry Model.
KR-MED Series CEUR Workshop Proceedings. 2012; 897: -3rd International Conference on Biomedical Ontology (ICBO 2012); JUL 21-25, 2012; Graz, Austria. [Oral Communication]
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Boeker, M; Schober, D; Raufie D; Grewe, N; Röhl, J; Jansen, L; Schulz, S. Ein Curriculum zur Lehre von robustem Ontologiedesign
Düsseldorf: German Medical Science GMS Publishing House; 2012. . 2012; Doc12gmds086: -GMDS 2012: 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS); SEP 16-20, 2012; Braunschweig, GERMANY. [Oral Communication]
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Boeker, M; Schober D; Raufie, D; Grewe, N; Röhl, J; Jansen, L; Schulz; S Teaching good biomedical ontology design
KR-MED Series CEUR Workshop Proceedings. 2012; 897: -3rd International Conference on Biomedical Ontology (ICBO 2012); JUL 21-25, 2012; Graz, Austria. [Oral Communication]
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Hastings, J; Batchelor, C; Schulz, S., Jansen, L. Janna Hastings, Colin Batchelor, Stefan Schulz, Ludger Jansen. Collective bio-molecular processes: The hidden ontology of systems biology.
Understanding and Modelling Collective Phenomena (UMoCoP). Antony Galton and Zena Wood (Eds.). 2012; 11-18.-AISB/IACAP World Congress; JUL 2-6, 2012; Birmingham, UK. [Oral Communication]
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Martínez-Costa, C; Queiroz de Andrade, A; Karlsson, D; Kalra, D; Schulz, S Towards the Harmonization of Clinical Information and Terminologies by Formal Representation
European Journal for Biomedical Informatics (EJBI). 2012; -13th International HL7 Interoperability Conference (IHIC 2012). Science for Real World Applications; SEPT 27-28, 2012; Vienna, AUSTRIA. [Oral Communication]
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Martínez-Costa, C; Schulz, S Semantic Interoperability for Health Network (SemanticHealthNet)
SNOMED CT Implementation Showcase 2012. 2012; -SNOMED CT Implementation Showcase 2012; OCT 25-26, 2012; Stockholm, SWEDEN. [Oral Communication]
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Rodrigues, JM; Schulz, S; Bousquet, C; Souvignet, J The CEN ISO Standard Categorial Structure as a Top-Level Set of Constraints for Ontology Disambiguation
KR-MED Series CEUR Workshop Proceedings. 2012; 897: -3rd International Conference on Biomedical Ontology (ICBO 2012); JUL 21-25, 2012; Graz, Austria. [Oral Communication]
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Santamaria, S; Fallon, M; Green, J; Schulz, S; Wilcke, J Developing the Animals in Context Ontology.
KR-MED Series CEUR Workshop Proceedings. 2012; 897: -3rd International Conference on Biomedical Ontology (ICBO 2012); JUL 21-25, 2012; Graz, Austria. [Oral Communication]
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Schulz, S; Rector, A; Rodrigues, JM; Chute, C; Üstün, B; Spackman, K. Ontology-based convergence of medical terminologies: SNOMED CT and ICD 11
Schreier, G; Hayn, D; Hörbst, A; Ammenwerth, E; editors. . 2012; -eHealth 2012 - Health Informatics meets eHealth; MAY 10-11, 2012; Vienna, AUSTRIA. [Oral Communication]
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2011

Journal Articles

** Boeker, M; Tudose, I; Hastings, J; Schober, D; Schulz, S Unintended consequences of existential quantifications in biomedical ontologies.
BMC BIOINFORMATICS. 2011; 12(e1): 456-456. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Brochhausen, M; Burgun, A; Ceusters, W; Hasman, A; Leong, TY; Musen, M; Oliveira, JL; Peleg, M; Rector, A; Schulz, S Discussion of "biomedical ontologies: toward scientific debate".
Methods Inf Med. 2011; 50(3):217-236 [OPEN ACCESS]
Web of Science PubMed FullText

 

** Herre, H; Hoehndorf, R; Kelso, J; Loebe, F; Schulz, S OBML - Ontologies in Biomedicine and Life Sciences.
J Biomed Semantics. 2011; 2 Suppl 4(8):I1-I1 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Jansen, L; Schulz, S Grains, components and mixtures in biomedical ontologies.
J Biomed Semantics. 2011; 2 Suppl 4(4):S2-S2 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

** Kreuzthaler, M; Schulz, S Truecasing clinical narratives.
Stud Health Technol Inform. 2011; 169: 589-593.
PubMed

 

** Santana, F; Schober, D; Medeiros, Z; Freitas, F; Schulz, S Ontology patterns for tabular representations of biomedical knowledge on neglected tropical diseases.
BIOINFORMATICS. 2011; 27(13): i349-i356. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Cornet, R; Spackman, K Consolidating SNOMED CT’s ontological commitment.
Applied ontology. 2011; 6: 1-11.
Web of Science FullText FullText_MUG

 

** Schulz, S; Seddig, T; Hanser, S; Zaiß, A; Daumke, P Checking Coding Completeness by Mining Discharge Summaries.
Stud Health Technol Inform. 2011; 169: 594-598.
PubMed

 

** Schulz, S; Spackman, K; James, A; Cocos, C; Boeker, M Scalable representations of diseases in biomedical ontologies.
J Biomed Semantics. 2011; 2 Suppl 2(5):S6-S6 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG

 

Schulz, S Standardisierung internationaler medizinischer Terminologien durch die IHTSDO
HL7 Mitteilungen. 2011; (28):

 

Schulz, S Kontroversen in der Medizinischen Informatik. Wozu benötigen wir standardisierte Terminologien wie SNOMED CT?
Swiss Medical Informatics. 2011; (73): 27-32.

 

Conference papers, proceedings, abstracts

Boeker, M; Hastings, J; Schober, D; Schulz, S. A T-Box Generator for testing scalability of OWL mereotopological patterns
CEUR Workshop Proceedings. 2011; 796: -OWL: Experiences and Directions 2011 (OWLED 2011); JUN 5-6, 2011; San Francisco, CA. [Oral Communication]
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Hastings, J; Jansen, L; Steinbeck, C; Schulz, S. Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders
CEUR Workshop Proceedings. 2011; 796: -OWL: Experiences and Directions 2011 (OWLED 2011); JUN 5-6, 2011; San Francisco, CA. [Oral Communication]
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Hastings, J; Steinbeck, C, Jansen, L; Schulz, J Substance concentrations as conditions for the realization of dispositions
CEUR Workshop Proceedings. 2011; 754 : -KR-MED 2010 - Semantic Applications in Life Sciences. Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, hosted by Bio-Ontologies 2010; July 9-10, 2010; Boston, MA, USA. [Oral Communication]
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Karlsson, S; Berzell M, Schulz S Information Models and Ontologies for Representing the Electronic Health Record
Proceedings of the 2nd International Conference on Biomedical Ontology. 2011; CEUR-WS(833):153-158.-ICBO 2011 - 2nd International Conference on Biomedical Ontology; JUL 26-30, 2011; Buffalo, NY, USA. [Oral Communication]
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Schulz, S; Brochhausen, M; Hoehndorf, R Higgs Bosons, Mars Missions, and Unicorn Delusions: How to Deal with Terms of Dubious Reference in Scientific Ontologies
Proceedings of the 2nd International Conference on Biomedical Ontology. 2011; CEUR-WS(833):183-190.-ICBO 2011 - 2nd International Conference on Biomedical Ontology. ; JUL 26-30, 2011; Buffalo, NY, USA. [Oral Communication]
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Yan, Y; Hastings, J; Jee-Hyub, K; Schulz, S; Steinbeck, C; Rebholz-Schuhmann, D Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules
Proceedings of the 2nd International Conference on Biomedical Ontology. 2011; CEUR-WS(833):357-363.-ICBO 2011 - 2nd International Conference on Biomedical Ontology. Workshop on Working with Multiple Biomedical Ontologies; JUL 26-30, 2011; Buffalo, NY, USA. [Oral Communication]
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Book chapters

Hastings, J; Batchelor, C; Steinbeck, C; Schulz, S Modularization Requirements in Bio-Ontologies: A Case Study of ChEBI
In: Kutz, O; Schneider, T editors(s). Frontiers in Artificial Intelligence and Applications. 230: Amsterdam, Berlin, Tokyo, Washington DC: IOS Press; 2011. p. 63 - 70. (ISBN: 978-1-60750-798-7)
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Schulz, S; Karlsson, D Records and situations. Integrating contextual aspects in clinical ontologies
In: Shah, N; Sansone, SA; Stephens, S; Soldatova, L. editors(s). The 14th Annual Bio-Ontologies Meeting. Vienna, Austria: ISCB; 2011. p. 49 - 52.
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Schulz, S; López García, P Modularity Issues in Biomedical Ontologies
In: Kutz, O; Schneider, T editors(s). Frontiers in Artificial Intelligence and Applications. 230: Amsterdam, Berlin, Tokyo, Washington DC: IOS Press; 2011. p. 7 - 9. (ISBN: 978-1-60750-798-7)
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Edited publications

KR-MED 2010 Semantic Applications in Life Sciences Proceedings of the 4th International Workshop on Formal Biomedical Knowledge Representation, hosted by Bio-Ontologies 2010 Boston, MA, USA, July 9-10, 2010.
Cornet, R; Schulz, S. editor(s). Aachen: CEUR-WS Proceedings; 2011. (ISBN: 6613-0073)

 

2010

Journal Articles

** Daumke, P; Schulz, S; Muller, ML; Dzeyk, W; Prinzen, L; Pacheco, EJ; Cancian, PS; Nohama, P; Marko, K Subword-based semantic retrieval of clinical and bibliographic documents.
METHODS INFORM MED. 2010; 49(2): 141-147.
Web of Science PubMed FullText FullText_MUG Google Scholar

 

** Oleynik, M; Nohama, P; Cancian, PS; Schulz, S Performance analysis of a POS tagger applied to discharge summaries in Portuguese.
Stud Health Technol Inform. 2010; 160(Pt 2): 959-963.
PubMed FullText

 

** Ouagne, D; Nadah, N; Schober, D; Choquet, R; Teodoro, D; Colaert, D; Schulz, S; Jaulent, MC; Daniel, C Ensuring HL7-based information model requirements within an ontology framework.
Stud Health Technol Inform. 2010; 160(Pt 2):912-916
PubMed

 

** Schober, D; Boeker, M; Bullenkamp, J; Huszka, C; Depraetere, K; Teodoro, D; Nadah, N; Choquet, R; Daniel, C; Schulz, S The DebugIT core ontology: semantic integration of antibiotics resistance patterns.
Stud Health Technol Inform. 2010; 160(Pt 2):1060-1064
PubMed

 

** Schulz, S; Schober, D; Daniel, C; Jaulent, MC Bridging the semantics gap between terminologies, ontologies, and information models.
Stud Health Technol Inform. 2010; 160(Pt 2):1000-1004
PubMed

 

** Schulz, S; Schober, D; Tudose, I; Stenzhorn, H The Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus.
AMIA Annu Symp Proc. 2010; 2010(1):727-731 [OPEN ACCESS]
PubMed PUBMED Central

 

2009

** Blobel, B; Chronaki, C; Stegwee, R; Grain, H; Hammond, WE; Jaffe, C; Kalra, D; Koehn, M; Macary, F; Sabutsch, S; Sheetham, E; Schulz, S; Tan, M; HL7 Affiliates Council HL7's comprehensive standards set and its international collaboration for enabling semantically interoperable eHealth and pHealth solutions.
Stud Health Technol Inform. 2009; 150:982-986
PubMed

 

** Blobel, B; Kalra, D; Koehn, M; Lunn, K; Pharow, P; Ruotsalainen, P; Schulz, S; Smith, B The role of ontologies for sustainable, semantically interoperable and trustworthy EHR solutions.
Stud Health Technol Inform. 2009; 150:953-957
PubMed

 

** Cornet, R; Schulz, S Relationship groups in SNOMED CT.
Stud Health Technol Inform. 2009; 150:223-227
PubMed

 

** Hanser, S; Zaiss, A; Schulz, S Health care procedures.
METHODS INFORM MED. 2009; 48(6): 540-545. [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Hasman, A; Andersen, SK; Klein, GO; Schulz, S; Aarts, J; Mazzoleni, MC MIE 2008: eHealth beyond the horizon--get IT there.
Methods Inf Med. 2009; 48(2):135-136
Web of Science PubMed

 

** Marwede, D; Daumke, P; Marko, K; Lobsien, D; Schulz, S; Kahn, T RadLex - German version: a radiological lexicon for indexing image and report information.
Rofo. 2009; 181(1):38-44 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Pacheco, E; Stenzhorn, H; Nohama, P; Paetzold, J; Schulz, S Detecting Underspecification in SNOMED CT concept definitions through natural language processing.
AMIA Annu Symp Proc. 2009; 2009(1):492-496 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Boeker, M; Stenzhorn, H; Niggemann, J Granularity issues in the alignment of upper ontologies.
Methods Inf Med. 2009; 48(2):184-189 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Schulz, S; Stenzhorn, H; Boeker, M; Smith, B Strengths and limitations of formal ontologies in the biomedical domain.
Rev Electron Comun Inf Inov Saude. 2009; 3(1):31-45 [OPEN ACCESS]
PubMed PUBMED Central FullText FullText_MUG Google Scholar

 

** Schulz, S; Suntisrivaraporn, B; Baader, F; Boeker, M SNOMED reaching its adolescence: ontologists' and logicians' health check.
Int J Med Inform. 2009; 78 Suppl 1(1):S86-S94
PubMed FullText FullText_MUG Google Scholar

 

** Stenzhorn, H; Pacheco, EJ; Nohama, P; Schulz, S Automatic mapping of clinical documentation to SNOMED CT.
Stud Health Technol Inform. 2009; 150: 228-232. [OPEN ACCESS]
PubMed FullText

 

2008

** Beisswanger, E; Lee, V; Kim, JJ; Rebholz-Schuhmann, D; Splendiani, A; Dameron, O; Schulz, S; Hahn, U Gene Regulation Ontology (GRO): design principles and use cases.
Stud Health Technol Inform. 2008; 136:9-14
PubMed Google Scholar

 

** Boeker, M; Stenzhorn, H; Schulz, S Applying a biomedical top-level ontology to encode biological taxa.
AMIA Annu Symp Proc. 2008; 3(1):882-882
PubMed

 

** Hofmann-Apitius, M; Fluck, J; Furlong, L; Fornes, O; Kolarik, C; Hanser, S; Boeker, M; Schulz, S; Sanz, F; Klinger, R; Mevissen, T; Gattermayer, T; Oliva, B; Friedrich, CM Knowledge environments representing molecular entities for the virtual physiological human.
Philos Transact A Math Phys Eng Sci. 2008; 366(1878):3091-3110 [OPEN ACCESS]
Web of Science PubMed FullText FullText_MUG

 

** Niggemann, JM; Gebert, A; Schulz, S Modeling functional neuroanatomy for an anatomy information system.
J Am Med Inform Assoc. 2008; 15(5):671-678 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Boeker, M; Stenzhorn, H How granularity issues concern biomedical ontology integration.
Stud Health Technol Inform. 2008; 136(1878):863-868
PubMed

 

** Schulz, S; Daumke, P; Fischer, P; Müller, M; Müller, ML Evaluation of a document search engine in a clinical department system.
AMIA Annu Symp Proc. 2008; 181(1):647-651 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Klein, GO SNOMED CT - advances in concept mapping, retrieval, and ontological foundations. Selected contributions to the Semantic Mining Conference on SNOMED CT (SMCS 2006).
BMC Med Inform Decis Mak. 2008; 8 Suppl 1(2):S1-S1 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Marko, K; Suntisrivaraporn, B Formal representation of complex SNOMED CT expressions
BMC MED INFORM DECIS MAK. 2008; 8: [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Schulz, S; Stenzhorn, H; Boeker, M The ontology of biological taxa.
Bioinformatics. 2008; 24(13):i313-i321 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

** Stenzhorn, H; Schulz, S; Boeker, M; Smith, B Adapting Clinical Ontologies in Real-World Environments.
J Univers. Comput Sci. 2008; 14(22):3767-3780 [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText FullText_MUG

 

Conference papers, proceedings, abstracts

** Weissenberger, C; Jonassen, S; Schultze-Seemann, W; Schulz, S; Matar, H; Fischer, C; Fogel, J Cultural differences among prostate cancer websites written in English, German, Hebrew or Arabic
INT J RADIAT ONCOL BIOL PHYS. 2008; 72(1):S502-S503.-50th Annual Meeting of the American-Society-for-Therapeutic-Radiology-and Oncology; SEP 21-25, 2008; Boston, MA. [Oral Communication]
Web of Science

 

2007

Journal Articles

** Andrade, RL; Pacheco, E; Cancian, PS; Nohama, P; Schulz, S Corpus-based error detection in a multilingual medical thesaurus.
Stud Health Technol Inform. 2007; 129(Pt 1): 529-534.
PubMed FullText

 

** Bitencourt, JL; Cancian, PS; Pacheco, EJ; Nohama, P; Schulz, S Thesaurus anomaly detection by user action monitoring.
Stud Health Technol Inform. 2007; 129(Pt 1): 655-659.
PubMed FullText

 

** Boeker, M; Stenzhorn, H; Kumpf, K; Bijlenga, P; Schulz, S; Hanser, S The @neurIST ontology of intracranial aneurysms: providing terminological services for an integrated IT infrastructure.
AMIA Annu Symp Proc. 2007; 78 Suppl 1(1):56-60 [OPEN ACCESS]
PubMed PUBMED Central

 

** Daumke, P; Marku, K; Poprat, M; Schulz, S; Klar, R Biomedical information retrieval across languages.
Med Inform Internet Med. 2007; 32(2):131-147
Web of Science PubMed FullText FullText_MUG

 

** Hahn, U; Schulz, S Ontological foundations for biomedical sciences.
Artif Intell Med. 2007; 39(3):179-182
Web of Science PubMed FullText FullText_MUG

 

** Markó, K; Daumke, P; Schulz, S; Klar, R; Hahn, U Large-scale evaluation of a medical cross-language information retrieval system.
Stud Health Technol Inform. 2007; 129(Pt 1):392-396
PubMed Google Scholar

 

** Schulz, S; Hahn, U Towards the ontological foundations of symbolic biological theories.
Artif Intell Med. 2007; 39(3):237-250
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** Schulz, S; Johansson, I Continua in biological systems
MONIST. 2007; 90(4): 499-522. [OPEN ACCESS]
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** Schulz, S; Marko, K; Hahn, U Spatial location and its relevance for terminological inferences in bio-ontologies
BMC BIOINFORMATICS. 2007; 8: [OPEN ACCESS]
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** Schulz, S; Stenzhorn, H Ten theses on clinical ontologies.
Stud Health Technol Inform. 2007; 127(Pt 2):268-275
PubMed

 

** Schulz, S; Suntisrivaraporn, B; Baader, F SNOMED CT's problem list: ontologists' and logicians' therapy suggestions.
Stud Health Technol Inform. 2007; 129(Pt 1):802-806
PubMed Google Scholar

 

** Stenzhorn, H; Beisswanger, E; Schulz, S Towards a top-domain ontology for linking biomedical ontologies.
Stud Health Technol Inform. 2007; 129(Pt 2):1225-1229
PubMed

 

2006

** Hanser, S; Zaiss, A; Schulz, S Comparison of ICHI and CCAM basic coding system.
Stud Health Technol Inform. 2006; 124(6):795-800
PubMed

 

** Marko, K; Baud, R; Zweigenbaum, P; Borin, L; Merkel, M; Schulz, S Towards a multilingual medical lexicon.
AMIA Annu Symp Proc. 2006; 8(Pt 1):534-538 [OPEN ACCESS]
PubMed PUBMED Central

 

** Marko, K; Schulz, S; Hahn, U Automatic lexeme acquisition for a multilingual medical subword thesaurus.
Int J Med Inform. 2006; 76(2-3):184-189
Web of Science PubMed FullText FullText_MUG

 

** Schulz, S; Beisswanger, E; Wermter, J; Hahn, U Towards an upper level ontology for molecular biology.
AMIA Annu Symp Proc. 2006; 39(3):694-698 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Hanser, S; Hahn, U; Rogers, J The semantics of procedures and diseases in SNOMED CT.
METHODS INFORM MED. 2006; 45(4): 354-358. [OPEN ACCESS]
Web of Science PubMed FullText

 

** Schulz, S; Kumar, A; Bittner, T Biomedical ontologies: what part-of is and isn't.
J BIOMED INFORM. 2006; 39(3): 350-361.
Web of Science PubMed FullText FullText_MUG

 

** Weissenberger, C; Muller, D; Beranek-Chiu, J; Neumann, M; Jonassen, S; Bartelt, S; Schulz, S; Witucki, G; Henne, K; Geissler, M; Fogel, J Gastrointestinal cancer web sites: how do they address patients' concerns?
Int J Colorectal Dis. 2006; 21(7):615-624
Web of Science PubMed FullText FullText_MUG

 

2005

** Daumke, P; Markó, K; Poprat, M; Schulz, S Multilingual biomedical dictionary.
AMIA Annu Symp Proc. 2005; 32(2):933-933 [OPEN ACCESS]
PubMed PUBMED Central

 

** Daumke, P; Schulz, S; Markó, K A CLIR Interface to a Web search engine.
AMIA Annu Symp Proc. 2005; 76(2-3):934-934 [OPEN ACCESS]
PubMed PUBMED Central

 

** Hahn, U; Daumke, P; Schulz, S; Marko, K Cross-language mining for acronyms and their completions from the web
In: Carbonell, JG, Motoda, H, Hoffmann, A. editors(s). DISCOVERY SCIENCE, PROCEEDINGS; LECTURE NOTES IN COMPUTER SCIENCE3735: 113-123. (ISBN: 3-540-29230-6)
Web of Science

 

** Mark, K; Schulz, S; Hahn, U Automatic lexicon acquisition for a medical cross-language information retrieval system.
Stud Health Technol Inform. 2005; 116(3):829-834
PubMed

 

** Marko, K; Schulz, S; Hahn, U MorphoSaurus--design and evaluation of an interlingua-based, cross-language document retrieval engine for the medical domain.
Methods Inf Med. 2005; 44(4):537-545 [OPEN ACCESS]
Web of Science PubMed FullText

 

** Schulz, S; Daumke, P; Smith, B; Hahn, U How to distinguish parthood from location in bioontologies.
AMIA Annu Symp Proc. 2005; 14(22):669-673 [OPEN ACCESS]
PubMed PUBMED Central

 

** Schulz, S; Hahn, U Part-whole representation and reasoning in formal biomedical ontologies.
Artif Intell Med. 2005; 34(3):179-200
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** Schulz, S; Hahn, U; Rogers, J Semantic Clarification of the Representation of Procedures and Diseases in SNOMED((R))CT.
Stud Health Technol Inform. 2005; 116(3):773-778
PubMed Google Scholar

 

2004

** Schulz, S; Hahn, U A description logics approach to CGPS.
Stud Health Technol Inform. 2004; 101(3):137-141
PubMed

 

** Weissenberger, C; Jonassen, S; Beranek-Chiu, J; Neumann, M; Muller, D; Bartelt, S; Schulz, S; Monting, JS; Henne, K; Gitsch, G; Witucki, G Breast cancer: patient information needs reflected in English and German web sites.
Br J Cancer. 2004; 91(8):1482-1487 [OPEN ACCESS]
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2003

** Ceusters, W; Desimpel, I; Smith, B; Schulz, S Using cross-lingual information to cope with underspecification in formal ontologies.
Stud Health Technol Inform. 2003; 95(22):391-396
PubMed

 

** Hahn, U; Schulz, S Towards a broad-coverage biomedical ontology based on description logics.
Pac Symp Biocomput. 2003; 90(3):577-588 [OPEN ACCESS]
PubMed Google Scholar

 

** Markó, K; Daumke, P; Schulz, S; Hahn, U Cross-language MeSH indexing using morpho-semantic normalization.
AMIA Annu Symp Proc. 2003; 90(3):425-429 [OPEN ACCESS]
PubMed PUBMED Central Google Scholar

 

2002

** Hahn, U; Romacker, M; Schulz, S Creating knowledge repositories from biomedical reports: the MEDSYNDIKATE text mining system.
Pac Symp Biocomput. 2002; 67(1-3):338-349 [OPEN ACCESS]
PubMed Google Scholar

 

** Hahn, U; Romacker, M; Schulz, S MEDSYNDIKATE--a natural language system for the extraction of medical information from findings reports.
Int J Med Inform. 2002; 67(1-3):63-74
Web of Science PubMed

 

** Hahn, U; Schulz, S Turning lead into gold? Feeding a formal knowledge base with informal conceptual knowledge
In: GomezPerez, A, Benjamins, VR. editors(s). KNOWLEDGE ENGINEERING AND KNOWLEDGE MANAGEMENT, PROCEEDINGS - ONTOLOGIES AND THE SEMANTIC WEB; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE2473: 182-196. (ISBN: 3-540-44268-5)
Web of Science Google Scholar

 

** Honeck, M; Hahn, U; Klar, R; Schulz, S Text retrieval based on medical subwords.
Stud Health Technol Inform. 2002; 90(2):241-245
PubMed

 

** Pschichholz, H; Boeker, M; Gaudes, R; Schulz, S; Klar, R InfoServerPlus: providing a medical library as application service.
Stud Health Technol Inform. 2002; 90(22):189-194
PubMed

 

** Schulz, S; Hahn, U A knowledge representation view on biomedical structure and function.
Proc AMIA Symp. 2002; 90(3):687-691 [OPEN ACCESS]
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** Weske-Heck, G; Zaiss, A; Zabel, M; Schulz, S; Giere, W; Schopen, M; Klar, R The German specialist lexicon.
Proc AMIA Symp. 2002; 90(2):884-888 [OPEN ACCESS]
PubMed PUBMED Central Google Scholar

 

2001

** Hahn, U; Honeck, M; Piotrowski, M; Schulz, S Subword segmentation - Leveling out morphological variations for medical document retrieval
J AMER MED INFORM ASSOC. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION; 229-233. ( Presented at: Annual Symposium of the American-Medical-Informatics-Association (AMIA 2001), WASHINGTON, D.C., NOV 03-07, 2001) [OPEN ACCESS]
Web of Science PubMed PUBMED Central

 

** Klar, R; Schlachter, S; Schulz, S Health informatics world wide--a WWW service for the health informatics community.
Stud Health Technol Inform. 2001; 84(Pt 1):357-360
PubMed

 

** Schulz, S Bidirectional mereological reasoning in anatomical knowledge bases
J AMER MED INFORM ASSOC. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION; 607-611. ( Presented at: Annual Symposium of the American-Medical-Informatics-Association (AMIA 2001), WASHINGTON, D.C., NOV 03-07, 2001) [OPEN ACCESS]
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** Schulz, S; Hahn, U Parts, locations, and holes - Formal reasoning about anatomical structures
In: Quaglini, S, Barahona, P, Andreassen, S. editors(s). ARTIFICIAL INTELLIGENCE IN MEDICINE, PROCEEDINGS; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE2101: 293-303. (ISBN: 3-540-42294-3)
Web of Science

 

** Schulz, S; Hahn, U Medical knowledge reengineering--converting major portions of the UMLS into a terminological knowledge base.
Int J Med Inform. 2001; 64(2-3):207-221
Web of Science PubMed

 

** Schulz, S; Honeck, M; Hahn, U Indexing medical WWW documents by morphemes.
Stud Health Technol Inform. 2001; 84(Pt 1):266-270
PubMed

 

** Schulz, S; Klar, R Virtual conferences in medicine.
Zentralbl Gynakol. 2001; 123(8):487-493
Web of Science PubMed FullText FullText_MUG

 

2000

** Franz, P; Zaiss, A; Schulz, S; Hahn, U; Klar, R Automated coding of diagnoses - Three methods compared
J AMER MED INFORM ASSOC. 2000; 250-254. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Hahn, U; Romacker, M; Schulz, S MEDSYNDIKATE - Design considerations for an ontology-based medical text understanding system
J AMER MED INFORM ASSOC. 2000; 330-334. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Hahn, U; Schulz, S Towards very large terminological knowledge bases: A case study from medicine
In: Hamilton, HJ. editors(s). ADVANCES IN ARTIFICIAL INTELLIGENCE, PROCEEDINGS; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE1822: 176-186. (ISBN: 3-540-67557-4)
Web of Science Google Scholar

 

** Romacker, M; Hahn, U; Schulz, S; Klar, R Semantic analysis of medical free texts.
Stud Health Technol Inform. 2000; 77(8):438-442
PubMed

 

** Schulz, S; Hahn, U Morpheme-based, cross-lingual indexing for medical document retrieval.
Int J Med Inform. 2000; 58-59(Pt 1):87-99
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** Schulz, S; Hahn, U; Romacker, M Modeling anatomical spatial relations with description logics
J AMER MED INFORM ASSOC. 2000; 779-783. [OPEN ACCESS]
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** Schulz, S; Romacker, M; Hahn, U Knowledge engineering the UMLS.
Stud Health Technol Inform. 2000; 77(Pt 1):701-705
PubMed

 

1999

** Hahn, U; Romacker, M; Schulz, S How knowledge drives understanding--matching medical ontologies with the needs of medical language processing.
Artif Intell Med. 1999; 15(1):25-51
Web of Science PubMed Google Scholar

 

** Hahn, U; Romacker, M; Schulz, S Discourse structures in medical reports--watch out! The generation of referentially coherent and valid text knowledge bases in the MEDSYNDIKATE system.
Int J Med Inform. 1999; 53(1):1-28
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** Hahn, U; Schulz, S; Romacker, M Part-whole reasoning: A case study in medical ontology engineering
IEEE INTELL SYST APPL. 1999; 14(5): 59-67.
Web of Science Google Scholar

 

** Romacker, M; Schulz, S; Hahn, U Streamlining semantic interpretation for medical narratives
J AMER MED INFORM ASSOC. 1999; 925-929. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Romacker, M; Schulz, S; Hahn, U Small is beautiful - Compact semantics for medical language processing
In: Horn, W, Shahar, Y, Lindberg, G, Andreassen, S, Wyatt, J. editors(s). ARTIFICIAL INTELLIGENCE IN MEDICINE; LECTURE NOTES IN ARTIFICIAL INTELLIGENCE1620: 400-410. (ISBN: 3-540-66162-X)
Web of Science

 

** Schulz, S; Romacker, M; Franz, P; Zaiss, A; Klar, R; Hahn, U Towards a multilingual morpheme thesaurus for medical free-text retrieval.
Stud Health Technol Inform. 1999; 68(8):891-894
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Conference papers, proceedings, abstracts

** Schulz, S; Faggioli, G; Romacker, M; Hahn, U Automatic import and manual refinement of medical knowledge
J AMER MED INFORM ASSOC. 1999; 1156-1156.
Web of Science

 

1998

Journal Articles

** Hahn, U; Romacker, M; Schulz, S Why discourse structures in medical reports matter for the validity of automatically generated text knowledge bases.
Stud Health Technol Inform. 1998; 52 Pt 1(Pt 1):633-638
PubMed Google Scholar

 

** Schulz, S; Auhuber, T; Schrader, U; Klar, R Quality criteria for electronic publications in medicine.
Stud Health Technol Inform. 1998; 51:217-226
PubMed

 

** Schulz, S; Romacker, M; Hahn, U Part-whole reasoning in medical knowledge bases using description logics
LECT NOTE ARTIF INTELL. 1998; 1504: 237-248.
Web of Science

 

** Schulz, S; Romacker, M; Hahn, U Part-whole reasoning in medical ontologies revisited - Introducing SEP triplets into classification-based description logics
J AMER MED INFORM ASSOC. 1998; 830-834. [OPEN ACCESS]
Web of Science PubMed PUBMED Central FullText

 

** Schulz, S; Zaiss, A; Brunner, R; Spinner, D; Klar, R Conversion problems concerning automated mapping from ICD-10 to ICD-9.
Methods Inf Med. 1998; 37(3):254-259
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1997

** Schulz, S; Schrader, U; Klar, R Computer-based training and electronic publishing in the health sector: tools and trends.
METHODS INFORM MED. 1997; 36(2): 149-153. [OPEN ACCESS]
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1992

** KROEGER, A; SCHULZ, S; WITTE, B; SKEWESRAMM, R; ETZLER, A Helminthiasis and cultural change in the Peruvian rainforest.
J Trop Med Hyg. 1992; 95(2):104-113
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** SCHULZ, S; KROEGER, A Soil contamination with Ascaris lumbricoides eggs as an indicator of environmental hygiene in urban areas of north-east Brazil.
J Trop Med Hyg. 1992; 95(2):95-103
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